vera is the reference implementation of the Entity-Record-Attribute-Value (ERAV) data model. ERAV is an extension to Entity-Attribute-Value (EAV) that adds support for maintaining multi-faceted provenance metadata for an entity 1.
The implementation of ERAV provided by vera is optimized for storing and tracking changes to time series data as it is exchanged between disparate technical platforms (e.g. mobile devices, Excel spreadsheets, and third-party databases). In this context, ERAV can be interpreted to mean Event-Report-Attribute-Value, as it represents a series of events being described by the reports submitted about them by various contributors in e.g. an environmental monitoring or citizen science project.
1: Sheppard, S. Andrew, Andrea Wiggins, and Loren Terveen. "Capturing Quality: Retaining Provenance for Curated Volunteer Monitoring Data." In Proceedings of the 17th ACM conference on Computer Supported Cooperative Work & Social Computing (CSCW 2014), pp. 1234-1245. ACM, 2014.
# Recommended: create virtual environment # python3 -m venv venv # . venv/bin/activate pip install vera
The core of vera is a collection of Django models that describe the various components of the ERAV data model.
There are four primary models (ERAV) and three auxilary models, for a total of seven models. The mapping from vera models to their ERAV conceptual equivalents is below:
The vera models are all swappable, which means they can be subclassed and extended without breaking the foreign key relationships needed by the ERAV model. The base models are technically split between three modules within vera, but can all be imported from
vera.base_models. For example, to customize the
Event model, subclass
BaseEvent and update your
# myapp/models.py from django.db import models from vera.base_models import BaseEvent class Event(BaseEvent): date = models.DateTimeField() type = models.CharField()
# settings.py WQ_EVENT_MODEL = "myapp.Event"
Note that as with any swappable model, Django migrations do not expect swappable settings to change after the initial migration. Thus, it is best to leave these settings alone once there is data in the database.
Each of the seven models are described in detail below.
Site model represents the location where an event occured. It is not strictly a part of the original ERAV definition but is a natural extension. In the default implementation,
Site is an IdentifiedModel with
# myapp/models.py from django.db import models from vera.base_models import BaseSite class Site(BaseSite): description = models.TextField()
# settings.py WQ_SITE_MODEL = "myapp.Site"
All site instances have a
valid_events property that returns all of the event instances that contain at least one valid report.
Event model corresponds to the Entity in the ERAV data model.
Event represents a time series of monitoring events. For example, each visit a volunteer makes to an observation site could be called an
Event model does not contain any metadata about the digital record describing the event. This information is in the
Report model, discussed below.
At a minimum, an Event instance has a
site reference (see below) and an event
date, which might be either a date or a full date and time, depending on project needs. The default implementation assumes a date without time. A custom
date field and additional attributes can be configured by extending
BaseEvent and swapping out
Event via the
WQ_EVENT_MODEL setting. Note that if
Event is swapped out,
EventResult should be as well.
To support custom workflows, the list of report statuses is maintained as a separate model,
ReportStatus extends IdentifiedModel with an
is_valid boolean indicating whether reports with that status should be considered valid. Additional attributes can be added by extending
BaseReportStatus and swapping out
ReportStatus via the
In a typical project, the
ReportStatus model might contain the following instances:
Report model corresponds to the Record in the ERAV data model.
Report tracks the provenance metadata about the
Event, e.g. who entered it, when it was entered, etc. Depending on when and how data is entered, there can be multiple
Reports describing the same event. The status of each of these reports is tracked separately.
At a minimum,
Report instances have an
event attribute, a
status attribute (see below), a
user attribute, and an
entered are set automatically when a report is created via the REST API. Additional attributes can be added by extending
BaseReport and swapping out
Report via the
WQ_REPORT_MODEL setting. Note that the
Report model contains only provenance metadata and no information about the event itself - the
Event model should contain that information.
In addition to the default manager (
Report also has a custom manager,
valid_objects that includes only reports with valid statuses.
Report instances have a
vals property that can be used to retrieve (and set) a
dict mapping of parameter names to result values (see below).
In cases where there are more than one valid report for an event, there may be an ambiguity if reports contain contradicting data. In this case the
WQ_VALID_REPORT_ORDER setting can be used control which reports are given priority. The default setting is
("-entered", ), which gives priority to the most recently entered reports. (See the CSCW paper for an in depth discussion of conflicting reports).
Parameter model corresponds to the Attribute in the ERAV data model.
Parameter manages the definitions of the data "attributes" (or "characteristics", or "fields") being tracked by the project. By keeping these definitions in a separate table, the project can adapt to new task definitions without needing a developer add columns to the database.
BaseParameter extends IdentifiedModel with
is_numeric boolean, and a
units definition (which usually only applies to numeric parameters). Additional attributes can be added by extending
BaseParameter and swapping out
Parameter via the
Result model corresponds to the Value in the ERAV data model.
Result manages the definitions of the data attributes (or characteristics, or fields) being tracked by the project.
Result is effectively a many-to-many relationship linking
Parameter with a value: e.g. "Report #123 has a Temperature value of 15". Note that
Result does not have a foreign key pointing to
Event directly - this is a core distinction of the ERAV model.
At a minimum,
Result instances have a
type (which references
value_numeric fields - usually only one of which is set for a given
Result, depending on the
is_numeric property of the
Result instances also contain an
empty property to facilitate fast filtering during analysis (see below). Additional attributes and custom behavior can be added by extending
BaseResult and swapping out
Result via the
WQ_RESULT_MODEL setting. Note that if
Result is swapped out,
EventResult should be as well.
Result instances have a settable
value attribute which is internally mapped to the
value_numeric properties depending on the
Result instances also have an
is_empty(val) method which is used to set the
empty property. The default implementation counts
None, empty strings, and strings containing only whitespace as empty.
EventResult model is a denormalized table containing data from the "active" results for all valid events. A valid event is simply an event with at least one report with an
ReportStatus. To determine which results are active:
Report, using the
WQ_VALID_REPORT_ORDERsetting. The first result in each group is the "active" result for that group.
(This is not exactly how the algorithm is implemented, but gives an idea of how it works)
In the simple case, where there is only one valid
Report for an event, all of the
Result instances from that
Report will be counted as active. In more complex situations, some
Result instances might be occluded.
Since this algorithm can be computationally expensive, the results are stored in the
EventResult model for fast retrieval. The
EventResult model should never be modified directly, as it is updated automatically whenever an
Result is updated.
EventResult model contains an
event attribute, a
result attribute, and all of the fields from both
Result (prefixed with the source model name). The full set of fields for the default
EventResult model is
Result are swapped out,
EventResult should be swapped as well. The
create_eventresult_model() function can be used to generate an
EventResult class without needing to manually duplicate all of the field definitions.
# myapp/models.py from django.db import models from vera.base_models import BaseEvent, Result class Event(BaseEvent): date = models.DateTimeField() type = models.CharField() EventResult = create_eventresult_model(Event, Result)
# settings.py WQ_EVENT_MODEL = "myapp.Event" WQ_EVENTRESULT_MODEL = "myapp.EventResult"
vera is designed for use with the wq framework, which can automatically generate offline-capable data entry forms for the
Report models. The
EventResult models are not meant to be edited directly, as they are populated when a
Report form is submitted. The default
report_edit template can be customized for a more compact layout. For example, see the Try WQ report_edit template and the wqxwq report_edit template.
vera includes built-in support for importing data from Excel and other spreadsheet formats via the Django Data Wizard. Four default wizard templates (serializers) are provided, as shown in the screenshot below.
Both the Report Series and Result Series serializers are used to import timeseries data (simultaniously populating the Event, Report, and Result tables). The difference between Report Series and Result Series is that the former assumes parameter names are listed as columns across the top of the spreadsheet (as in the screenshot below), while the latter assumes each row lists a single parameter and a single result.
vera also ships with an EventResultSerializer and views that leverage Django REST Pandas' charting serializers. This makes it possible to quickly generate d3.js charts from the
EventResult table via wq/chartapp.js or the underlying modules (wq/chart.js and wq/pandas.js). The provided
BoxPlotView implement identify URL filtering, meaning you can filter by
Parameter by adding additional slugs to the URL.
For example, with the following URL configuration:
# myproject/urls.py from vera.results.views import TimeSeriesView urlpatterns = [ url(r'^data/(?P<ids>[^\.]+)/timeseries$', cls.as_view()) ]
The following requests would be possible:
||HTML table and interactive wq/chartapp.js chart showing EventResult values for the Parameter
||CSV export of the same|
||CSV export for all values from Sites
© 2013-2017 by S. Andrew Sheppard